NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074006_11427193

Scaffold Ga0074006_11427193


Overview

Basic Information
Taxon OID3300030931 Open in IMG/M
Scaffold IDGa0074006_11427193 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Litter TCEFB (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)652
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Flavipsychrobacter → Flavipsychrobacter stenotrophus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameUSA: Montana
CoordinatesLat. (o)46.9233Long. (o)-110.871944Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083617Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0074006_114271931F083617N/AMEAVDPAADAAHTPDKKASGLDDLLATAITPKVIEGLSKGFENFNKTVQQVNVVAGSFTVTQNLIKEIESASGDVKKFRDNMAGMTASFDGFNKSLQSVGQMTAASQTMIKDFEVAGQGMKAFAKNITDMNANFDQFGKTIAAINQMTASSATMLKEFEAATLGMKAYNKNITDLSKVYQAQLDAFRKN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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