NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265737_107270

Scaffold Ga0265737_107270


Overview

Basic Information
Taxon OID3300030941 Open in IMG/M
Scaffold IDGa0265737_107270 Open in IMG/M
Source Dataset NameMetatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLA4 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)641
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9992Long. (o)10.7901Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000475Metagenome / Metatranscriptome1097Y
F008629Metagenome / Metatranscriptome330Y

Sequences

Protein IDFamilyRBSSequence
Ga0265737_1072701F008629N/ARPSLRMVSQGAQLRTSGVVYAVHHPAGPQDAAGWNSDFGYLVTTGAAPVVDGEWTNYEPTPTARPTRPRSSCWSGAPTEVPAYLRYLSMYGIGLNAYQLQPGYLIKSYDNFSGPTTINALTWSCVSNSEPQPGQGAGSLLMAWFRQQNS
Ga0265737_1072702F000475N/ARWVVGRRKNVVWSEPQMPPFVKINPDSPPGLGDGLQPGDLSMAAEMQEFLEMDEGEEEPV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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