NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075379_10898934

Scaffold Ga0075379_10898934


Overview

Basic Information
Taxon OID3300030946 Open in IMG/M
Scaffold IDGa0075379_10898934 Open in IMG/M
Source Dataset NameForest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA7 EcM (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)701
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Champenoux
CoordinatesLat. (o)48.7184Long. (o)6.3471Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079021Metagenome / Metatranscriptome116Y
F084656Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0075379_108989341F079021N/AMKKSFLLVSTGILFTVLGCSGSSQKDVSKSTPTVVQASVVPASTSPVAEPAAALPVPSVGQANQQAWRSQNVEDRHGNAIVLKGTSLDSKFDLVILRKGKYSFFVFCQARTLGVCL
Ga0075379_108989342F084656AGGVYLRVKFEDGQEKRIEWDELGFATENLYSVLWSYPAKKDAPIGPVLGGTTGDSLGGDQLLLEDMMKHKTVLLEVEPGVTTQFDLTGLAHEIPKVRAPCQPLC
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