NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073997_12131055

Scaffold Ga0073997_12131055


Overview

Basic Information
Taxon OID3300030997 Open in IMG/M
Scaffold IDGa0073997_12131055 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3B (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)678
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameUSA: Montana
CoordinatesLat. (o)45.7589Long. (o)-113.9119Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010040Metagenome / Metatranscriptome309Y

Sequences

Protein IDFamilyRBSSequence
Ga0073997_121310551F010040GGAMRVLPVALLLSALVAGCAPFIPVRDDFGTSAAVPAGDIPPEFAEFNAYDPAINPLLADQTCATPYQPQEQKYLAAAGGRIVQARGRCATHIPFWGN
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