NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074038_11961515

Scaffold Ga0074038_11961515


Overview

Basic Information
Taxon OID3300031008 Open in IMG/M
Scaffold IDGa0074038_11961515 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Litter N1 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)744
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → Rotaria sordida(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameSweden: Dalarna County
CoordinatesLat. (o)60.97Long. (o)15.87Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020311Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0074038_119615151F020311N/AYLTVVKLSVDGSKICYQCDQKKPSPWWKFWGEKITRCHGIAFEKYATRTSKAFGTSVLTCYTKFDEGGAVIKRGAYGFGEVFDKTVKCADRFHTCCETDLCNKDTQAPCPPSPKQTEKKEVKACYQCKGVENCRPNRLQGTEIRTSSLLGAKNLYCYTKFDPKSGVPIARGGFGFGEAFDKSLKCDAKDYLCCYENLCNSHTAGFCTKHH
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