Scaffold Ga0074042_10001270

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074042_10001270

Scaffold Ga0074042_10001270

Overview

Basic Information
Taxon OID	3300031031 Open in IMG/M
Scaffold ID	Ga0074042_10001270 Open in IMG/M
Source Dataset Name	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Litter C2 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	686
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	Sweden: Dalarna County
Coordinates	Lat. (^o)	60.97	Long. (^o)	15.87	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001542	Metagenome / Metatranscriptome	673	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074042_100012701	F001542	N/A	NYWTITQFTTPGTALQTPNGTLLTNENVDWTWNGLFYQCTTHENIPCLYRLWTTTFVICLLGIIFLLVGGIFICWDLLQISDRRFAIPLLMFIACVLLTAGVFDYGSWARLNSHSSRTMIAAIVFAYTALPISAFVAGRYSAFDRFVPNGHVTNGQKYVATATNGN

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