NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074042_11157698

Scaffold Ga0074042_11157698


Overview

Basic Information
Taxon OID3300031031 Open in IMG/M
Scaffold IDGa0074042_11157698 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Litter C2 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1165
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameSweden: Dalarna County
CoordinatesLat. (o)60.97Long. (o)15.87Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056656Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0074042_111576981F056656N/AALFLLVLTLTACYCDDSILKMIEKEPEGRDLMNALFVQVHAKGPNLQQGDIYKVLKFSRDKADKLEDKIHKRLAYNQKNCENDLKDFAKKVHENRLWEFTISRHVANNERSSKRLKNLISRTTHEQEDYQALQNIIQASWSKWKTFQTSAIANLQKVISALRKARQNLRSLDGAGALIQVSEDSQFFTNLNEIRVDFEGNFVNLEGFRPVIQKLLELMAKPAAVSKPLVRRKLRSVLKKIQRQVRERRDEIKAIGERQNAIFSAIIESYKENLLRIKKLLARLNTEAGHLQKRGVALKDSNTQARQITNVSKNIFTTRKRQCISYAERITRMSVGIQRTRNIVAQVAEILTERFGKLKTYFVQRDMSLLQMKDIKN
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