Scaffold Ga0265754_1000833

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0265754_1000833

Scaffold Ga0265754_1000833

Overview

Basic Information
Taxon OID	3300031040 Open in IMG/M
Scaffold ID	Ga0265754_1000833 Open in IMG/M
Source Dataset Name	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1360
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → unclassified Planctomyces → Planctomyces sp. SH-PL62	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Norway: Oslo
Coordinates	Lat. (^o)	59.997	Long. (^o)	10.7902	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022474	Metagenome / Metatranscriptome	214	Y
F029822	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265754_10008331	F029822	N/A	IVNNGTPTPPSACHPCLFYGGDINTSDSNAAGMSDENTLLIVGGSSTYGAVTIPEGVTASVYGILFNVQADAAFDPLTASYDVRSGVSEGNGGTSLASGTGPAVVTATGRNFLGLNEYTVSVSWSTPVTLTAGTYWFNATPNCTNTLDGSCFVFRQFVSNTTSLTNNVRGAWQPIHEMYLNSSFFGFTWANWCDSSLGFNAHQCAGMSFGLRGTQQ
Ga0265754_10008332	F022474	AGGAGG	VKTTLFAATFVVALTLSAAAAQKPQASQHLAGNNETPKMAPSGVPPALCTPCVFYGGDLNTSDENAAGLSDENTLLIPGSSTYGSFNVFSGSSVTVTGILFNVQADANFDPLTASYDVRSGVTEGNGGTSLASGNVSATVAATGRNFIGLNEYSVAVTLTTPLLLGPGEYWFNVTPTCSNGAQDGSCSVGRFFVSNTTQRTN

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.