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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031044 Open in IMG/M |
| Scaffold ID | Ga0265747_100516 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU4 (Metagenome Metatranscriptome) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1514 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → unclassified Planctomyces → Planctomyces sp. SH-PL62 | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Norway: Oslo | |||||||
| Coordinates | Lat. (o) | 59.9992 | Long. (o) | 10.7901 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022474 | Metagenome / Metatranscriptome | 214 | Y |
| F029822 | Metagenome / Metatranscriptome | 187 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0265747_1005161 | F029822 | N/A | EWIVNNGTPTPPSACHPCLFYGGDINTSDSNAAGMSDENTLLIVGGSSTYGAVTIPEGVTASVYGILFNVQADAAFDPLTASYDVRSGVSEGNGGTSLASGTGPAVVTATGRNFLGLNEYTVSVSWSTPVTLTAGTYWFNATPNCTNTLDGSCFVFRQFVSNTTSLTNNVRGAWQPIHEMYLNSSFFGFTWANWCDSSLGFNAHQCAGMSFGLRGTQQ |
| Ga0265747_1005162 | F022474 | AGGAGG | VKTTLFAATFVVALTLSAAAAQKPQASQHLAGNNETPKMAPSGVPPALCTPCVFYGGDLNTSDENAAGLSDENTLLIPGSSTYGSFNVFSGSSVTVTGILFNVQADANFDPLTASYDVRSGVTEGNGGTSLASGNVSATVAATGRNFIGLNEYSVAVTLTTPLLLGPGEYWFNVTPTCSNGAQDGSCSVGRFFVSNTTQRTNNVFGGAQGNYQMYLNSSYFGFTWANWCDSSLGLRPTQCDAMSYGLMGSA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |