NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170834_108522308

Scaffold Ga0170834_108522308


Overview

Basic Information
Taxon OID3300031057 Open in IMG/M
Scaffold IDGa0170834_108522308 Open in IMG/M
Source Dataset NameOak Coassembly Site 11 - Champenoux / Amance forest
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1285
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Champenoux
CoordinatesLat. (o)48.7184Long. (o)6.3471Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001118Metagenome / Metatranscriptome773Y
F007481Metagenome / Metatranscriptome350Y
F080295Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0170834_1085223081F080295GAGLRIAGRKRKGCDIGYAPAIGSCEEANSVDTRTIAALDVITAFAVPYPNCPSQDQSVFSGLDALQVALLSRSLSLLRNGKFYFANPFSRR
Ga0170834_1085223082F001118N/AMGVTVELQNLGDALLTGEITANVEHALNDKPGEWRVAITGSRGGENWEMRVEGPNGFERSYTLTGAAGEHEADAIRRLILQLLPSDSF
Ga0170834_1085223083F007481GAGLPRRPNTRFDLDEQILRALNKIKKPSTAEEITELVNHDLGPGDRPFEAKQIAAWLRSAKETVVNLYWLENRPRR
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