NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170834_108714084

Scaffold Ga0170834_108714084


Overview

Basic Information
Taxon OID3300031057 Open in IMG/M
Scaffold IDGa0170834_108714084 Open in IMG/M
Source Dataset NameOak Coassembly Site 11 - Champenoux / Amance forest
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2862
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Champenoux
CoordinatesLat. (o)48.7184Long. (o)6.3471Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021412Metagenome / Metatranscriptome219Y
F059857Metagenome / Metatranscriptome133Y
F101646Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0170834_1087140842F101646AGGAGMPRSSYLLQALFIAALASGTAGCHHSENPTPSGVGSTSIDPAQDEFVQAFLTAHDKKDLDAQEKLVDWDDVTESSRNHFIGDLKSGLGVKITAKTESMPTVPEGFTALYNIPPEKFLVVLYDDPRGVITVKFPIAKKDGRYYFAMRKQ
Ga0170834_1087140843F021412N/AMSIPSLGSSQPINDSNFFIVLMPNRGRTRFLRGVILFFLIVGALACLFVAVSALSEFHARHSWPVAQGYVTAVKVKTYTGPSSRDHVDHYLVEYGVRFAVPAEQCLTGTTFVIDREPPLCEGIARTRSIDSSATANDWMMRHAVNSAVGILHDPHGPDVKIVGESPWLVYPIKGILTMCGWMAFFLTFLNIAQRRLQFLETLPEDYDASPPSSSQPPGPNDLIDLQLR
Ga0170834_1087140844F059857N/ASFALLSTVLFFLRLSMASHAVILYIVLPSLAAGIAGYIWGGTILDSSYVKTYGQAVLRGLAVSAGAYLIFAVLYAWELPMLEGQWSMGRVGSLFLFTLMLGILMGGPLAAVTGMISGITLFRFGRHVFAESGDRGSEASSL
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