NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265760_10107037

Scaffold Ga0265760_10107037


Overview

Basic Information
Taxon OID3300031090 Open in IMG/M
Scaffold IDGa0265760_10107037 Open in IMG/M
Source Dataset NameMetatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)888
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9979Long. (o)10.7895Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000334Metagenome / Metatranscriptome1279Y
F009911Metagenome / Metatranscriptome311Y

Sequences

Protein IDFamilyRBSSequence
Ga0265760_101070371F009911AGGAGGMTAIAISGMGLTGVLRLTWVQDNLAHVLDYSQADETSGTWTGLACPGHGLALGTDVDNEVLRQLADGSELADLVWEAPDEFTAEHAQAFKDAMRAHLTGDAERASQLWEDLRAVWSHAWSSNYAVLEFMQGT
Ga0265760_101070372F000334N/AAVFAATMADRDDWDAATRAQRHLAVAADAELRRRHPGQHHPPLRSAEPQPATGAQRDELTLPAGQQIPEIGQWIKDLVTTHRTFADTLAERQSLPVPSENPDYDDLGQAFPPWPGPARDAILQPPKPEIRPSPQVLQRAADRDADPEAAD
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