NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308201_10013970

Scaffold Ga0308201_10013970


Overview

Basic Information
Taxon OID3300031091 Open in IMG/M
Scaffold IDGa0308201_10013970 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1553
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004359Metagenome / Metatranscriptome442Y
F093332Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0308201_100139702F004359AGGAGMYEQFEHLLQGLVSPLDHLKGAYSELADDFFRKLRQQIEVTQNELRESEQLEVYYTAQGHEPILVSRIGYLEPHLLVLYGQDDHNNDCKVLAHLLTAHLTLKLVRHGDPAKRRTINFVEPTKGA
Ga0308201_100139703F093332GAGMFLTQQATDAKTAMQRTLADMQTTVKEAADVRWWTQQYPWYAVGAAAVVGFVTATQVLAPSDHRAPPAPPTQGQSAGRPSWMSSLFNLVRSTLMGAIVEAMRAGSQHSERAQAEHAQAHADVG
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