NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308204_10158914

Scaffold Ga0308204_10158914


Overview

Basic Information
Taxon OID3300031092 Open in IMG/M
Scaffold IDGa0308204_10158914 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)677
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007942Metagenome / Metatranscriptome342Y
F072059Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0308204_101589141F072059GAGMTAPSWQEDDPNNLSLIQSNAAQLITELRAAAAERILPTREELCRWHARLYAGCDVPIVGYVGHFRGDPTVKELLDYEVGLGARLKDGNLEKMGVWARTVNDEMN
Ga0308204_101589142F007942N/AFPLRWRNERLRALTAEVAARLGISQNELIEQAIEHEVVARGAMLSEDLRAAADRLAELTREQYERLQARNVEGFVAGEGLPEPVQARLTPRAATVDSVAVDRPAIARDVTAIYRSARTEL

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