NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308193_1026638

Scaffold Ga0308193_1026638


Overview

Basic Information
Taxon OID3300031096 Open in IMG/M
Scaffold IDGa0308193_1026638 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)776
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072008Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0308193_10266381F072008N/ASDDDARLDIRIRDSGSIPIPNAHVTVLIDKGALALRRDLSSFPNSGFDPLEPVPAAVNFASPFSGDTCDQSNNGWLTQSATTGGYSWPFLTSSRQQGDGYTNSEGVISACVYVDTTLAPGTTPGKINVQVIVESPNQGGLYNPGGVVNNQFGYNPYYPLGNNLGLPNYLGVANIVLTSTITVVGPPASITVAAAPTSLNCGEKATITVTVKDSAGQNVSDRTRVELITNFGGVIGGTTATLGPVSVAGGNVYPVSSSS
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