NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138347_10054955

Scaffold Ga0138347_10054955


Overview

Basic Information
Taxon OID3300031113 Open in IMG/M
Scaffold IDGa0138347_10054955 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic ocean transect - DeepDOM_S7_Trap_metaT (Eukaryote Community Metatranscriptome) (version 2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1251
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)-22.5Long. (o)-33.0Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021466Metatranscriptome218N

Sequences

Protein IDFamilyRBSSequence
Ga0138347_100549551F021466AGGMALLAKVLLSLLACQQCWGAKVVRHEAAIQANGDMAITSKTDASELLSSVEKMASAEHVDPDAIKLIKDLVANQLLPALIESHKIASDDIKARLDAIKECEQKSREQDKGVQEDIAKKVHAVRVIHSDCRDKELGLTKDANEKCQFLDFLTEPAALPKESADKKTKLAYGETMMGYWCNKDEQFKACSAATDALAPVVKECNKKQTQFESEFCAMAIVYHAQCQDLNDVCYTETRAAYDSSVASTSKLLGKWKIEYQALKKINCFLDVWMENGDANTVSSEKLAACKATEADASILNIDFGTPVKEFVCADAGFGTLPDYPGTPEFVTKEYGAWPDLVQDVIHCHIEDPVAVSTTAGANTPR
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