NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170822_15099341

Scaffold Ga0170822_15099341


Overview

Basic Information
Taxon OID3300031122 Open in IMG/M
Scaffold IDGa0170822_15099341 Open in IMG/M
Source Dataset NameOak Spring Coassembly Site 11 - Champenoux / Amance forest
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1027
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Champenoux
CoordinatesLat. (o)48.7184Long. (o)6.3471Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013224Metagenome / Metatranscriptome273N

Sequences

Protein IDFamilyRBSSequence
Ga0170822_150993412F013224GAGVTDPSPIITPAFQLLSAVASVGRVRTKSYVVSRRFNALALGAVAADFAIKYLCTERADHLVGLVVFTILTARTLMILCFESIEAEVFRRRVTCAVAFFACAVASVASELAATGSLALVTLLPLVGIGLGCLGEASNEMVVRRCVLAMGCIMALFAISTNAR
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