NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308024_1000789

Scaffold Ga0308024_1000789


Overview

Basic Information
Taxon OID3300031140 Open in IMG/M
Scaffold IDGa0308024_1000789 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #420
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12150
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F010167Metagenome307Y
F048916Metagenome147Y
F056153Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0308024_100078911F048916N/AMVGELVAPTANFALGLYNADTYYSKECAWYEEIKLDPATKQWLTDNNPPKIVITDLSKVARNNDIYKEVCEPKKDTEDTTPDE
Ga0308024_100078912F002078AGGAGMDIAAMFEGQGWFEIAGQVVLVFTALTGALPDKFVQKIPVLGTVWPIFNWLAGNVFNNINHPKGMAASADVEKEIDEAKAKVRVRNTMPDVLDGL
Ga0308024_100078914F056153N/AMDSPAELAGFIESVGVPVATAIGLGGALWWLIKYVLGSIVEKITEAQAQTEADIKDLKGIVIALIDKTTVAQSDLIRLDTMIRVRYGLAPDERRIGRNPDDKVK
Ga0308024_10007894F010167GGAGMVFAHVSLIQEGQAALFYRHTKKMKGYMIAGTLIGPDLIDKMNFAKIWKYFVSEVVQADDIYCSILVGAENSMFTNYLDYYDTIDGLKIYKVDNYLKQKYSDYDKHVERKVPIKSE
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