NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308024_1013873

Scaffold Ga0308024_1013873


Overview

Basic Information
Taxon OID3300031140 Open in IMG/M
Scaffold IDGa0308024_1013873 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #420
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2382
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016619Metagenome / Metatranscriptome246Y
F017844Metagenome / Metatranscriptome238N
F034394Metagenome175Y
F087902Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0308024_10138731F017844N/ARLFALDTSDAEGYGYPRIGIQVAIPTEYYEATRRSAGYPFVNNAFVEKGVFRTMGETVCRHFKSQGKIRDIKL
Ga0308024_10138732F016619N/AMAITIVQNADHKSLTGKTLSIQAELTSKLKSTIVDVTYAAGDNYATGGNVVDLSLGSRISTVIGAQILHSSAGLLLQYVPAAAGAAATGKIKCFGQNPTSATATVIALEELDSADTAVNSMTIRIRIIGY
Ga0308024_10138733F087902N/AMTYTNHNVKDVAGTSTVKAGHGVIVAVYVTKAGASGDKIVFHNGVDASAPVEFTVYGEGIQHVQDIFRRFEAGIHVVATGSTAKYIVVYK
Ga0308024_10138734F034394N/AMVTTTTYCTVGDISDFLRVPITSTTTPNKEMVRKIIARKEEELDRRIGHTWKTKKITREVHDLPLLYTFGWGTPVFLQHRNIHILDGTEGDKIEVWKGESDTWENVVGQNQWYNCEYERGTLHLRGYLFTILRKNRIRVTYRYGGDNFAGDTVIPLDVTDAIIKMTAIEVMNTSFRMDEIPSGGSVSPSESKRYWQEDIDLCISNRREVFVIP
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