NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308021_10001752

Scaffold Ga0308021_10001752


Overview

Basic Information
Taxon OID3300031141 Open in IMG/M
Scaffold IDGa0308021_10001752 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #351
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9882
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)25
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021858Metagenome / Metatranscriptome217Y
F029555Metagenome188Y
F039176Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0308021_1000175213F021858GGAMINVNKFENRIVKFKRISEGVETVKEAEVRQIDYDQMADIPRSVTARFVEPLNAVMTLGYDKSVGKFRGPLGPDILESDFDITDFIKRSKLGGGDITIRSPKRNRPKF
Ga0308021_1000175219F029555GGAMSDFKGGYKSEVARYKLIPGERVLFENYIKTHELIDLAGRIDKGEPHEVNPNYGGQGYTYLYPEVEDLGRVKVALINNKWKLDWENNRG
Ga0308021_100017527F039176N/AMEEDYELDLSLNRSLEELVSSYFEAHGAGVNIDDDSSEKEKSDYYVLENYLSDMGAI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.