NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308021_10002387

Scaffold Ga0308021_10002387


Overview

Basic Information
Taxon OID3300031141 Open in IMG/M
Scaffold IDGa0308021_10002387 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #351
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8451
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001048Metagenome / Metatranscriptome793Y
F007052Metagenome / Metatranscriptome359Y

Sequences

Protein IDFamilyRBSSequence
Ga0308021_1000238710F007052N/AMRKVNLNGELNMKNNETYFVAKLINKGKFLSSEIFESLEEARLWAMKESKLLISDMEMLRSTNVGDICVKIDKHFFAYEDSIN
Ga0308021_1000238711F001048N/AMKIVSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKEFNRIELLVNKRVRWEIGSEGMAIWNACGVKDIPTLAKAYGIV

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