NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308021_10008789

Scaffold Ga0308021_10008789


Overview

Basic Information
Taxon OID3300031141 Open in IMG/M
Scaffold IDGa0308021_10008789 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #351
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4444
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012639Metagenome / Metatranscriptome279Y
F029595Metagenome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0308021_100087892F029595AGGMKCFESPSGMKNPIIWHKRQSVRDFVKQKPMFSQLMQESKNCMLNHPELKNNVKGAIQCETIHPATMSQFNNYTFHTHPHNIPYPSQTDKNTTRNLKKKYLLIGVVPQNKTYVFSDEDNFEKSIATI
Ga0308021_100087895F012639AGGAGMSSNNSGLVLNCTATYAAAAPVATVLSVTMQTSPTVAGVTELQVPLTENWIATDVYILAAGGAGSATVIAPVITMDKNRGRTLVQTPPLSAMLITSNTRPRFSPQPIGFEGGSIIRMFATSTVLNGGAISNIQFSVAISIV

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