NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308022_1055334

Scaffold Ga0308022_1055334


Overview

Basic Information
Taxon OID3300031142 Open in IMG/M
Scaffold IDGa0308022_1055334 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #353
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1228
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007605Metagenome / Metatranscriptome348Y
F041250Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0308022_10553342F007605AGGAGMPFIIAGVVKSMAFSMLGNSKIIEKVIILLLETLAKKTDSDVDDKLVKLLKESLGKSGK
Ga0308022_10553343F041250AGGAMTVNGTIGAVSEHSLVKAAVPFLVAGIMALCTWLFTSVMSLEQQVKLISEGTVHNLEEKVDKLSNKIDAMSITLTDLRVSLGGRDRRDQH

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