NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308025_1003369

Scaffold Ga0308025_1003369


Overview

Basic Information
Taxon OID3300031143 Open in IMG/M
Scaffold IDGa0308025_1003369 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #422
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6991
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089163Metagenome / Metatranscriptome109N
F105862Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308025_10033693F089163N/AMNTIKITPKLLDEYSTILNEVDRKIYDLGIVLRQKNLADLTFVIKRLDSFKDIYDESLFPKAVEELKSKKLGKSFNEIQLIICSDYLLKPIEKLIEENLINKQSLNINDWITNIDTNLDNDDDLIYMVHKFTFWTLLLTRSLTLIWDKKDLKNFPSERFLELNVQGKSMIFETQKDVEQFIERNKSKTRIALFKHQGIFIESTFQSALGYLKRLTNSINN
Ga0308025_10033697F105862N/AMKYKLEMYGWSVEAMGHSLNDSQVKSIQDLMVNSGYSELWEVRNDLEEKGIIDDIYSPDLFHESRGLANDALWFVVSDENNKEVLKFITQDMGDFFEVLGDAADDVPYEGYIAIPGSGDSSEVDNILATFDEGKGGIAGFETFESDTVPIPIDFCYQKGDIATPDGDWEFVSKVYFKAKELEVNEYLDYSGKASTVNIYRKDGTIIS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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