NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308025_1015924

Scaffold Ga0308025_1015924


Overview

Basic Information
Taxon OID3300031143 Open in IMG/M
Scaffold IDGa0308025_1015924 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #422
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3037
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022460Metagenome / Metatranscriptome214Y
F054045Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0308025_10159243F022460AGGAMATVKDKRTGFPSLYRATYEEGWVVKNTGHDYSKSLLNNTMSKYMFKNKHIREFLENYLTPIMVFYINKVKYVRIFYNFAVPKWYQKIN
Ga0308025_10159244F054045N/AVNRWQHLYFFDKEGDNYNMNYDSSTDMWTGDIFLPQVSIDLFEVGQLFILQKMIDSTNTLVYTNPTFKFGYPHDYIDGATGDPTGTGGCGWEAEWKTVTPKEVFLFQFDKDFNTGTQSALVQEPDGPPLVKYDKLTIPLDYDDSQTISPEGYIITKSNDIKSIALQINIAFSSGDENTYKRTLQITDKCTNTVVAEFTVWAESIEEDERLRVMTQNMGYNVIAADSTIFRDTNLKEA
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