Scaffold Ga0310821_100026

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310821_100026

Scaffold Ga0310821_100026

Overview

Basic Information
Taxon OID	3300031145 Open in IMG/M
Scaffold ID	Ga0310821_100026 Open in IMG/M
Source Dataset Name	Sorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States - P4_Day56_Rep1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	317340
Total Scaffold Genes	326 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	204 (62.58%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Growth Medium → Lab Enriched Sorghum-Adapted Microbial Communities From Joint Bioenergy Institute, Emeryville, California, United States

Source Dataset Sampling Location
Location Name	USA: Emeryville, California
Coordinates	Lat. (^o)	37.8406	Long. (^o)	-122.2901	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F064527	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310821_100026248	F064527	AGGA	MSTMRDPADRVRTLLLRADNVLKNEGDPADRARRARAALEEARSVAAGGGVDPRVVELIERRLTALEAGGPG

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