NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308023_1005796

Scaffold Ga0308023_1005796


Overview

Basic Information
Taxon OID3300031167 Open in IMG/M
Scaffold IDGa0308023_1005796 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #418
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2825
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)37
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089409Metagenome109N
F105879Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308023_10057962F105879N/AMKTKYNITEINPQTIREVRQMIKDSLSVIMEDSNLKFELGNATYDEDSFRFTGFRISLADALSPEQKALEQMLKEWNTNPMYKTIDATKIGTDRGLSYKLVGYKPRARVKPWIIQDIRTGSTYKAPDHLIERMFSEDK
Ga0308023_10057967F089409GGAGGMDNEIDLIDLRSLTFYFKMGEYPDLDSATVRSGKYFDGTIMTKEDKIRFKDDYPEAFYSN

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