NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228595_108135

Scaffold Ga0228595_108135


Overview

Basic Information
Taxon OID3300031172 Open in IMG/M
Scaffold IDGa0228595_108135 Open in IMG/M
Source Dataset NameMetatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_D6_32mM_2 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1157
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)47.6519Long. (o)-122.3113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028693Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0228595_1081352F028693N/AGVVRAARHEHTSYRNGCSWRSRDGGLPICQMTKSASRSQSDIAKIIDLAESRLISTTPGSVPPHFDDGGHLPFGGTIGNTRGPSAFGRRKATRANAIGNPQALLLNFPPQNGPAQLACWERNYKSSIYMDPSAEGERLNTTNWTVGLQGKPTEPSYLALAQQTWGNLRQTACTRPTVAPAFIPPKRDATAEQVAAASYSWKWPEREQRPAAPQIKRPEQLTQSFLEEYEQRPPWLKY
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