Scaffold Ga0308020_1002817

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308020_1002817

Scaffold Ga0308020_1002817

Overview

Basic Information
Taxon OID	3300031175 Open in IMG/M
Scaffold ID	Ga0308020_1002817 Open in IMG/M
Source Dataset Name	Marine microbial communities from water near the shore, Antarctic Ocean - #349
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4099
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-68.5596	Long. (^o)	77.8957	Alt. (m)		Depth (m)	25
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F105862	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308020_10028174	F105862	AGAAG	MKYKLGMYGWSLEATGHSLSDAQVKSIQDLMNSNDYIELWEVRNNLEEEGIIEDLYIPDLFHVSGGLDNGALWFVVSDENNQEVLRFNAEDMGDFYETLGDAADDVPYEGYLAIPGHGDKSEVDNILATFDESKGGSAEFEPFESDTVPKPADFCFQNGDIGTPEGDWDIVSKVYFKGKELEVCEYLDNRGKASTVKIYRKDGSIIS

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