Basic Information | |
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Taxon OID | 3300031197 Open in IMG/M |
Scaffold ID | Ga0255310_10000124 Open in IMG/M |
Source Dataset Name | Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 14600 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (80.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Vancouver, British Columbia | |||||||
Coordinates | Lat. (o) | 49.2598372 | Long. (o) | -123.2459363 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001436 | Metagenome / Metatranscriptome | 695 | Y |
F040185 | Metagenome | 162 | N |
Protein ID | Family | RBS | Sequence |
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Ga0255310_1000012412 | F040185 | GGTGG | MSASMAQVELSPRSTHGRLPEWFARETEARSRSPLRREAVWHSRTRPVGNYGTTLAIHPRKRHRQFDDPEYRRARLTALASVVAAVAWTSFCITTAFVRLDSENFGKWRDWLITADEPVMPLSERLEAAIAALREVSRGVPTPVVVVADSIGAADSALPLSMKVTSYMPDTKIVLKGLAVGTTLTSGASGGDRDWRTSVEDLPYAYVIPPHGYVGVMTPVAELRDIDGHALTRTPMQFTWAAVDGSSTIEKKEPAENEPPVTAVASAADAGNQQLFGQFVEQKEKVVLPKPRPIKHASLGGKASKPKKQIATAHGYKERMPRRDLGADTRWASNELPPHSSFLEPDPRRDRRAIVDGIFRSLFYGGDANECGPATLKRGTQKKSGDDCDWSR |
Ga0255310_100001246 | F001436 | GGA | MNTEKKDVATLIELLKMAAERWPHVETDHVLQSDLFHEDLSLLEMWPEACRRTGAGKREFPPAVIKLWKQRLGRTN |
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