NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307495_10020682

Scaffold Ga0307495_10020682


Overview

Basic Information
Taxon OID3300031199 Open in IMG/M
Scaffold IDGa0307495_10020682 Open in IMG/M
Source Dataset NameSoil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1109
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007625Metagenome / Metatranscriptome348Y
F009618Metagenome / Metatranscriptome315Y

Sequences

Protein IDFamilyRBSSequence
Ga0307495_100206821F009618AGGAVRLRFQRRSAAAAAAVVLLSLTFAATAGAQYYIYWWQQNMPPNGLGYDRQTAHNHIYNELVFGPNAGWRSEVWEVTPAGYRHFDKWCVGNCFNAHPGYYYTYAFCSNRDGGTHFVYDCKDQW
Ga0307495_100206822F007625GGAGVLAAAAVAGLLTQLGLGGSDRVQIGNGSVSALARAARAADTLPQSVLDYPFGGRNFASPDGAGSRLLQEQGSLKLYAVPGKGRMLCLVEVDAVANTAGGACADREILRTGSIYMADRQEDGSRLVVGLLGDGHTYAEANGRRATVENNSFVLEQVEGGDLTVGSPTASQHVDLGG
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