NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307495_10033192

Scaffold Ga0307495_10033192


Overview

Basic Information
Taxon OID3300031199 Open in IMG/M
Scaffold IDGa0307495_10033192 Open in IMG/M
Source Dataset NameSoil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)964
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057424Metagenome / Metatranscriptome136N
F102734Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0307495_100331921F102734GGAMHGITRRMFCAVGLSLLAATSVSFAQQPETVRVRGTIEA
Ga0307495_100331922F057424AGGAGMSSRIARLLIGMAIAVAIVPLGIGAAGSAGAHPSGLRLAAQDCLTNRSEAPVSETDARYAGRRERREAAPATGLLGLTACRANFDPRALPPAA

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