NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307931_1004263

Scaffold Ga0307931_1004263


Overview

Basic Information
Taxon OID3300031208 Open in IMG/M
Scaffold IDGa0307931_1004263 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #47
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8342
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043167Metagenome156Y
F087244Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0307931_10042631F043167N/ALADLEHFPEVNGIINIEKNTVNLLVYTFINKVDTFMIEDFNDYEIVRNSDTVMLDRLETFISDNDLMMPDLKEIKKHYKIIE
Ga0307931_10042635F043167N/ALKGGPQIVGGGFINCSNNKLTDLEYFPEVSGYINTKFNLINLLVYTFIKDANSFMIEDFNDYEIVRNGDTVMLDRLQTFIRDNDLEMPDLDEIKKHYKIIE
Ga0307931_10042639F087244N/AMPLPHFTQISNVGSPGGPGTLPDEVVYKNLFEVTFILPVILQAQGRDPILLLENATKVDLEAAALTAFDIQNVTQRYKYSTRQFLTTPTKTSGEINIPFQVNVNQEGAMETWNTMKAWYDLVFNSQNGSLHYKSDLIGTIIVNQHDKKGVVLRRVTFQNVQLKKLGGYDLDWSSNDIIKEVTANFVWDYFIDEYIDQNFTINPPLVSGY
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