NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307931_1023563

Scaffold Ga0307931_1023563


Overview

Basic Information
Taxon OID3300031208 Open in IMG/M
Scaffold IDGa0307931_1023563 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #47
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1859
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012504Metagenome280Y
F018841Metagenome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0307931_10235633F018841N/AMNVSLNLSPGQLSKLRNGHGIRIGPAMFGKGVDMIIDPMTFNNMMKKLERGKGAVISMSGGEIEQNKMEGTGLFAGAGNKSGKISRHKKALKWTGYVDDTLRKGIDTGRYGYEQFKEATNPLASEGKKAIIGLSKLFGGELDGDEMEGEGFFDDIKKGYNRKIKNSDLGKALRESAGMAISDGYDRGARELGKNKYGKPISQYMRNKRGSNVDKLTGYTGLGLRMAGEGRMKTAVYRRPGLDKLMTKHGKGLRMSGGKCEMCGGSMNDKFLFADQAL
Ga0307931_10235634F012504N/ACSRVPMEQQNAYRSLQIKGTNSSSLAVDYMIFAIYEKNFQLDVISGNINKID
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