NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307964_1020859

Scaffold Ga0307964_1020859


Overview

Basic Information
Taxon OID3300031210 Open in IMG/M
Scaffold IDGa0307964_1020859 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #596
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1271
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001408Metagenome702Y
F020291Metagenome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0307964_10208592F001408N/AMIKKIKDYLKRTRHHLHAIVGIIGGFLASLALSWVWLGFRNLDALDKAILFIAPAFVIGYAWERYQGIINKWDIFVSGVAICLGVYLGGLLF
Ga0307964_10208593F020291N/AMYYTGTKTECEAYNLEVYNGTESMKQDPFTTSYASIKEIEGQFYILKHKDFESNMQEVNQPPKNTEL

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