NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307974_1001815

Scaffold Ga0307974_1001815


Overview

Basic Information
Taxon OID3300031211 Open in IMG/M
Scaffold IDGa0307974_1001815 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #784
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14938
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000607Metagenome992Y
F002411Metagenome561Y
F005080Metagenome413Y

Sequences

Protein IDFamilyRBSSequence
Ga0307974_100181513F000607N/AMRVDSSTGKGTSGMDKFSSKVHIMIVHMELGGNLFHPLRIKTLFLERLQSASDVDGLVPPSHTQKDDVESNGGSLKNVAEIFVLFFCGVQLVLRSGVLTILDLVEVDVTPSFAEVFRSVLSGVGGSTGGWQCCWAGCSQSPAIAPCHFEEATPLH
Ga0307974_100181514F002411GGAGMVIRSLLPISMETMHEPKEPLLLIVLKIMRHAKLCLSVIMFLICVCCHPERMCRALSTCGQRGQV
Ga0307974_10018154F002411GGAMLIRSLLPISLETMHDPKEPVLLIASKIMRHTKLCLLVIMFLLICVCWYPERMCRALSTYGQRGQV
Ga0307974_10018155F005080AGGMFIRTVQQNVFLILNRVPVTFVTDPELIRPSIPVMTHSLDQKVMTRKAKARKCTAENVGNIQAKVGR
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