NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307974_1007352

Scaffold Ga0307974_1007352


Overview

Basic Information
Taxon OID3300031211 Open in IMG/M
Scaffold IDGa0307974_1007352 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #784
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7659
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002904Metagenome522Y
F025890Metagenome199Y
F098378Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0307974_100735213F002904N/AMRFDNSTGKGTSSMDKFSSKVHGVHMKLGGKLLNSLRVKTQFLERLQSVSVVDGAVHTQKDD
Ga0307974_10073527F025890GGAGGMGHVCCMGMIMGLCLVFYVFFCKPVDVVEGISLRACNSDGGVCIVGVGGG
Ga0307974_10073528F098378N/AMRVDNSTGKGTSSMDKFSSKLHGVHMKLGGKLLNSLRIKTQFLERLQSVSVVDGATHTQKDDVESNGGSLENAAKVFVLFLCGVQLVLRSSVLTVLDFDEVYVTPRFSEVFGLMLSGVGGSAGGWRCCWGAPSQLPPATPKNPPPCSSLLFLCFCRGGSNQHKNWAAGG
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