NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307974_1013119

Scaffold Ga0307974_1013119


Overview

Basic Information
Taxon OID3300031211 Open in IMG/M
Scaffold IDGa0307974_1013119 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #784
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5312
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002904Metagenome522Y
F039419Metagenome163Y
F059522Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0307974_10131192F002904N/AMRVDNSTGKGTSSMDKFSSKVHRVHMELGGKLLNSLRIETQFFERLQSVGVVDGGAAHT
Ga0307974_10131194F039419GAGMSDGVFIQFVCQFYNFMVVQIRVCQRYVCIVFVDSPHSSNKDHMKLDFPMSLSV
Ga0307974_10131196F059522N/AMLHQNLSAFYKVKAHSGIAGNECADAIAKRSALHDGGHDVHFQPPAPDGNAYTHLYCLAAKNTDEDPSGRGAITPRLCALSDSKAKLKTEMCKSHRLGSAKTGTGYYNYWKDLRPLVKKQATNALWNNSNLKFYKSVML
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