NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307974_1022126

Scaffold Ga0307974_1022126


Overview

Basic Information
Taxon OID3300031211 Open in IMG/M
Scaffold IDGa0307974_1022126 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #784
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3633
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001864Metagenome624Y
F008123Metagenome / Metatranscriptome338Y
F012594Metagenome / Metatranscriptome279Y

Sequences

Protein IDFamilyRBSSequence
Ga0307974_10221265F001864GAGMTRYRFEIDTDYAIRIWDDENPNDSGAPFMLQPDWPDVTPWASAAQATDWAEVFIAALVDAESELVAGNSPSTHPAIRPEPELEIEEN
Ga0307974_10221266F012594GAGGMPVTSTGVTVGTSITAVSGPFISSKVVYLQSGTEGAVTYVGGDDVSAANGILLSETNNAVFQTNADDTLYCISDTVGAVVKVVEVK
Ga0307974_10221267F008123AGAAGMAEETNSSIRITNAQVYEKLIEVSNVQIEMVVELRGLKYLPNKVADIENRLSKVELIARLVYGVYGATLGAVA
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