NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307974_1033139

Scaffold Ga0307974_1033139


Overview

Basic Information
Taxon OID3300031211 Open in IMG/M
Scaffold IDGa0307974_1033139 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #784
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2685
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012281Metagenome282Y
F018841Metagenome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0307974_10331392F018841N/AMNIALNLSATQLRNLRNGKGIRISPAMFGSGVDMIIDPMNYNNLLKKLERGKGAVMSMGNDELEENEIQGTGLFAGAGNKSGKISRHKKALKWRGFADDTLRKGIDTARYGYEQYKEATNPLASEGKKVIKGLSKMFGGEMEGDGLFDDIKKGYNRKVKNSKLGSALRESAGNVIGDVYDRGGRELGKNKYGKTLSQYMKDTKGSNVKRLTGYTGLGMKLSGEGRVMRPAVVRHDLSKLKHGKGLRMSANGLTMGGNCEMCGGSMNDKFLFADASL
Ga0307974_10331393F012281N/ALYYIILEMLSNHDIDELVVKMGIKNFKGSYYKDTLKKVEPNSSYIINLNSEYNEKNERNKGSHWVALITDDMKRGIYFDSYGEREPIQIKNLLKCNQYKLGHTSKNIQSLMSNLCGFFCLAFIYFLTVSKQRTKNIINDTAIFLNLFEDLDLVQDVYKNEFILSLFFTDKQSKTLLFDNNNIGMSKDNKIDNRFNIEDKPLSL
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