NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307974_1113667

Scaffold Ga0307974_1113667


Overview

Basic Information
Taxon OID3300031211 Open in IMG/M
Scaffold IDGa0307974_1113667 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #784
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)967
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001408Metagenome702Y
F002402Metagenome563Y
F014810Metagenome260Y

Sequences

Protein IDFamilyRBSSequence
Ga0307974_11136671F002402N/AMYYKGTKEQCEDYNAKVTLGENYQSSTNSWANVTSNQNGEGFAILKHENYKSDMTLIDKIPDSWYNNLEI
Ga0307974_11136672F001408N/AMKKFKDYFKRTRHHLHAGVGIIGGFLASLALSWVWIGFRNLDALDKAMWFLAPAFIIGLIWEWKQGKINKLDILVSGIAISTGVYLGGLLF
Ga0307974_11136673F014810N/AMSIFSENLGVIITGITGAIGGIVAFFKGKKSRESNANIEIGKAYELMAKQNNEFIEIMSEKVDEQTRKIEHLEGEVNGLRIENRQLLDELKKYRQ
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