NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307973_1014635

Scaffold Ga0307973_1014635


Overview

Basic Information
Taxon OID3300031219 Open in IMG/M
Scaffold IDGa0307973_1014635 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #782
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1471
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001408Metagenome702Y
F008116Metagenome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0307973_10146351F001408N/AMKNYFKRTRHHLHAIVGITGGFLACLALSWVWIGFRNLDALDKAILFICPAFVIGYAWERYQGIINKWDILVSGIAISTGVYLGGLLF
Ga0307973_10146353F008116N/AMSDWGKGVINDIGWGQGANNDIGWGSIYDKSNAGETLLLASQFDPQAQIQVDRITAAGGTIEDVNVIDADIKFLKSIGLFDNLKYAVDPRAGITERVDGGDTFASKIFDYSGSDADTANATGSAQPKKGILNGVTSLDFDGVDDRLTDEDTVTFLAGENQFSIAVYAQDFINSDFFGRVVDKFSPDSNGKEFGKSRDNIIVFTNITLYNPYQNTQIIASGTSDTSNLQRGFISGSLLGTETNAVNYVGKTIGCIRGIRIDSIFAKTKFQKNWDFNALPTPSQAAAINTYLTNQFNIS
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