NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307948_1059312

Scaffold Ga0307948_1059312


Overview

Basic Information
Taxon OID3300031221 Open in IMG/M
Scaffold IDGa0307948_1059312 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #280
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1643
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015820Metagenome251Y
F059522Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0307948_10593121F059522N/AMIHASPEPICFYEVKTQSGIAGNECADAIAKHSALHDGGHDMHFQPPAPDGNAYTQLYWLAAKDTDEDPSGGGAIAPRLRELSDLKAKLKTEMSKSHRLGSANTNTGYYNYWKDLRPLVNKQATNDFWNNSNLIFYKKLNVVRYCTGTIIN
Ga0307948_10593122F015820N/AMASVLIVQALQKGPCGADQISYTDIGSADKLSEQGLDLRNTANKTLPSWLLSNLTAHALKASSRPDATLFLPSTVCSSRVTTCNPNFQQLAKDKKLNPNQWEVRLIEFKFCEDTRPDPQLQKAKAQHSMLIANLNRQGYREVKLHV
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