NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307972_1107985

Scaffold Ga0307972_1107985


Overview

Basic Information
Taxon OID3300031222 Open in IMG/M
Scaffold IDGa0307972_1107985 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #780
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1111
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007247Metagenome355Y
F008116Metagenome338Y
F020291Metagenome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0307972_11079851F008116N/ASVIDADIKFLKSIGLFGNLKYAVDPRAGITQRVDGSDTFASKIFDYSGSDADTANATGSAQPKKGILNGVTSLDFDGVDDRLTDEDTVTFLAGEEMFSVGVFAQDFNNSEDFGNVIDKFSPDSGGKNFGRSRDDIGVYGIDSLFTPYQNVQILASGTSDTSNLQSGFISGSLIGTETNAVNYIGKSLGSIRNRPTLFFAKGKFQKNWDFNALPTTEQAAAINTYLTNQFNISV
Ga0307972_11079852F020291N/AMYYKGTKTECKAYNLEVYNGTENMKQDPFTTSYASIQEIEGQFYILKHKDFESNMDEVSELPKSTNIQP
Ga0307972_11079853F007247N/AMKKIKDYFKRTRHHLHAIVGITGGFIASLALSWVWLGFRNLEALDKAMWFLAPAFIIGLIWEWRQGK
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