NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307981_1020498

Scaffold Ga0307981_1020498


Overview

Basic Information
Taxon OID3300031223 Open in IMG/M
Scaffold IDGa0307981_1020498 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #987
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2833
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014668Metagenome261Y
F018841Metagenome232Y
F028317Metagenome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0307981_10204981F028317N/AMLSNHDIDALVVKLNIPNFKGCFYKDTLKKIEPSSSYIINLNSEFNEKNERNAGSHWVALITDDM
Ga0307981_10204982F018841N/AMNVSLNLSASQLSKLRNGHGIRIGPAMFGKGVDMIIDPMTFNNMMKKLERGKGAVISMSGGEIEQNKMEGTGLFAGSGNKSGKISRIKKARKWRDFSDETLRKGIDTGRYGYEQFKEATNPLKSEGKKVIKGLSKMFGGELEGDEDEFEGEGFFDDIKKGYNKKVKNSALGKALRESAGMAISDGYDRGAREIGKNKYGKPISQYMRNKRGSNVDKLTGYTGLGLRMAGDGKMRPAVVRPDFSKWKNAVERSPGMRPAVVRPDPRELKKYFKNVKGKGLRMSGGECEMCGGSMNDKFLFSDIAL
Ga0307981_10204984F014668N/AHNATNWTAQTSQFRAYNGTLPLMLNNVADGFDTATAGTLRASVYVGDTCYDTTQRTTGTLATGGVGKQVELHVQAVQMLPDIESNYAQNHMRDVSYHDYYQFSLKNIASGESFNHLVSNGISNLKAVLIIPHLNTLNNNVNLFDDGQPQLLGHINNFNVLVGGSNVLHADARYTYQSYINEFHNEFGVNGNQSPGLGSSLIDYKSWLKKPYYYVNCSRVPMEQQNAYRSLQIKGTNSSALAMDYMIFAVYSKSFSLDVISGNINKID
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.