Scaffold Ga0307982

Basic Information
Taxon OID	3300031224 Open in IMG/M
Scaffold ID	Ga0307982_1008881 Open in IMG/M
Source Dataset Name	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #989
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031224 Open in IMG/M

Scaffold ID

Ga0307982_1008881 Open in IMG/M

Source Dataset Name

Marine microbial communities from Ellis Fjord, Antarctic Ocean - #989

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7383
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (8.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7383

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (8.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Organic Lake
Coordinates	Lat. (^o)	-68.457	Long. (^o)	78.1911	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Organic Lake

Coordinates

Lat. (^o)

-68.457

Long. (^o)

78.1911

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001894	Metagenome / Metatranscriptome	621	Y
F026120	Metagenome / Metatranscriptome	199	Y
F027899	Metagenome / Metatranscriptome	193	Y
F030562	Metagenome	185	Y
F068214	Metagenome	125	Y
F068453	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307982_100888111	F026120	N/A	MSELDIQEEPNKKLKIMNTSNNLDKSLADELPPPLPNYSGFNFVISGPSGSGKTTLLTSIMSARKKKGIRQSSRNLFDKILKCSPTLGQGKSQKNDPFHDVKGEQKWKVFNNETMNEIYETLEKNRDEDEHTVVY
Ga0307982_10088812	F001894	N/A	MSESAKIANIHYIYQQRPNKERANKMVKRKLGRFGYELDEANTDKDVLTAKRGNTVHINYTGTNVNSPRDIISDVTLATGVQRINPQFKERRQKTREIMRQYGDDKDYSLSGHSLGGSIALNTIKQSKSIRDRVNVVHAFNPGYTKPFHESIKVEKPIKKELDKKVNVHRVKGDIVSAHASVFRGSWGSRTL
Ga0307982_10088813	F068453	GGAG	MLESLSQCDYIAFMDTYDFYDKDYIGYSIFEMETNDKSIAGSADMCVYHKGDFYKQKCLFLHYLNEATLVFKKSIWSPFNSTNSNEGLPFLEKHLGNIIETNIDRLMCCIAHDHNTIPKKQWLVDQYNSKQFFVSIFQTY
Ga0307982_10088814	F068214	N/A	MSLHHNTGALTPQQANYIPAGKFIYTDETFLIDPPKYQEGEAFPRMGKELVPAHFSYAHHNPDFTPVASPSLPMNYGTYIYNIVDGYQ
Ga0307982_10088815	F027899	N/A	MSYALDTPNSNQVIFLNSENSIYKSVDGEGEYNYSFQTPIQLPTNCQMIISVTDAQLPNIMPNVNSTNNKITFFIPTFNKYFTIEIRDDDGTTDKVYNVNEFLAYVNAKILLEASGQFSLYGEFQSTMSKIKWYSNFPF
Ga0307982_10088816	F030562	N/A	MIFYRPQEVQRFIIRKQTINNLSFIFTDTQGNELNIFSNDAMITLKIEYMYKPEMRSVEEGTIDYELRKLSQVPMTKEAIEGAYNPETNQFIRE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307982_1008881

Overview

Ecosystem & Geography

Associated Families

Sequences