Scaffold Ga0307982_1013810

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307982_1013810

Scaffold Ga0307982_1013810

Overview

Basic Information
Taxon OID	3300031224 Open in IMG/M
Scaffold ID	Ga0307982_1013810 Open in IMG/M
Source Dataset Name	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #989
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5412
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Organic Lake
Coordinates	Lat. (^o)	-68.457	Long. (^o)	78.1911	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078008	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307982_101381011	F078008	AGGA	MSANNGNYPAKPQGPTMTVIINGEEHQRTIKGYVDCLPYPETFDDEFYHRVISSVVPTIVKSK

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