NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307982_1044456

Scaffold Ga0307982_1044456


Overview

Basic Information
Taxon OID3300031224 Open in IMG/M
Scaffold IDGa0307982_1044456 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #989
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1954
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020855Metagenome221N
F068214Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0307982_10444561F020855N/AMSGYNLDTPYSNQVIFLNSQNSIYKSIDGKGQYNYSFQTPIQLPINCEMLISVTDAQLPNIMPNVNSTNNKISFFIPTFSKNFTIELRDDDGTTDNVYNVNEFLAFVNSRILLEASNQFSLYGEFQPMTSKIKWFSNFPFQIIDTPNYPTTCIDLLGFKKNNQNEVVYESSEVLLSSILNPTYHITMPSCVNFTGTRFIFVKFNNISVNNLNGSGVTDNAMVRIDNNAPFGYMIFYRPSEVQRFIIRKQTINNITFSLTDTQGKELNIFSNDAQITLKIEYMYKPEMRSMEEGTINYELRKLGKIPM
Ga0307982_10444562F068214N/AMSLQQMTRKLTPQEANYIPAGKFIYTDETFLIDPPKYQEGEAFARMGKELVPAHFSYGHHNPDFTLVASPSLPMNYGTLIYNSVTGYQ
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