NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307497_10135731

Scaffold Ga0307497_10135731


Overview

Basic Information
Taxon OID3300031226 Open in IMG/M
Scaffold IDGa0307497_10135731 Open in IMG/M
Source Dataset NameSoil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1005
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.0356Long. (o)-122.86Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016945Metagenome / Metatranscriptome243Y
F079255Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0307497_101357312F016945N/AMLAIMAAAVALLALAGEVAAQTRGGWLLVTPPPVPERRMLMKVYAASSDSEVRAAVASLPGEEQVRLVTKVYKILTIPAPADRTEALLAALQDTAAPVSSWRTLEKFDSATSCEDKRERALQSFERAAAKVRSESPEDDELAVEDWTILEGLAAGRMSRCVPEATLSLR
Ga0307497_101357313F079255N/AARYMSWPLQSLRAFMDKRPDLRVALQALVSRDLAGKVERLLPQSGSEGR
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