NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307928_10003220

Scaffold Ga0307928_10003220


Overview

Basic Information
Taxon OID3300031227 Open in IMG/M
Scaffold IDGa0307928_10003220 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #232
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12455
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (42.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)24
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046685Metagenome151Y
F064414Metagenome128Y
F075727Metagenome118Y
F077915Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0307928_1000322014F075727N/AMINKLNKKGWVARDFIIAMLVFSGVLAIYVVMIGSMANDYDNTTIIDTEFSEKFDKFSDDTDRAGEMWSASTSEGGLSLVGTTELLFFSTFKVISLVFTSVVSAGEQLAGFGEFFGIPSEISSIFMVLIFTILTVSIVFIIISSIRSGKEL
Ga0307928_1000322015F077915AGGAGMAITDYYVAPTGNETSGLFELSKYIGISATAGLFWPVMLMVIWIVSFLGFKQYSTSRAWTFASFFCSMLSIFLAVLNLMTPKWMYLCIILTLVGLVWLKLEAQ
Ga0307928_100032205F046685N/AMQQQEIPQEQYQSIPVSSDELYANAAQEDKIKNIISQLDPENQLKEIEMRIRGYKKNVFTRDWEKIDPDSPEPPRLLISRFISYLSSIMNQNTTQGNLSDRQINALMSQAINYVADELDGNSTIYNLDNNYTERTRIGQIMLNSMLFTLNRSLNGQEAKRMWKAMSLSDNLTNDDKGKFTEALKFWK
Ga0307928_100032209F064414GAGGMGISDITSKMPGMGPGGMTNIVYILIGVAVLIICGFGLWWFLKKRKTWNIKVEFKIPRNIKKVRTKEGTIKIIGTLNKEWGKGFYDARKGSVFVKRKGKKAVAMKPFDIKQYLSTGNILTVVQTGIEDYRPIRDESYIELKDINGDDGALVQAVIDTSESKSWKNTFEREAKMTYSIKNWIAEHGALVAMGLVLFMNLVGFSIVIGRMPK
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